Kathmandu University school of sciences offers Bachelor of Science in Applied Physics program to understand the core areas of physics and specialized applications in building electronic devices and underlying principles that make use of technologies at work. Some of the study areas are Laser physics, microelectronics, computer-based lab instrumentation, astronomy and astrophysics. Research and statistics are an integral part of learning of this program.

Kathmandu University school of science offers Bachelor of Technology in Environmental Engineering. This program provides technical knowledge and environment principles to eliminate environment pollution and increase quality of life and sustainable environments. The program provides knowledge in chemical physical biological processes of natural and engineered environments. 

Kathmandu University School of Science offers two years four semesters Master in Pharmacy program. This program allows specializations in two areas: industry pharmacy and pharmaceutical care. This program helps to understand drug performance from the chemical and physical properties of therapeutics. This program allows them to work in community pharmacy and provide services like vaccinations and diabetes screening with practical hands-on learnings.

Kathmandu University School of Sciences offers a Bachelor of Technology in Biotechnology four years program. It is the knowledge of harnessing biological systems and organisms to perform specific tasks and produce valuable substances. It uses the knowledge of microbiology, molecular biology, immunology, biochemistry, microarrays, proteomics.

Bachelor of Pharmacy is a four year program of Kathmandu University School of Medical Sciences. This program prepares professionals who can prepare, dispense and use medicines for optimal therapeutic results in patient care. This program also has a compulsory internship provision and applies rigorous project-based training for positions in pharmaceutical industries, hospitals, research organizations.

Kathmandu University offers a Bachelor of Science in Environment Science program. This program provides knowledge in eco friendliness. It provides courses in basic science, interdisciplinary courses, core environmental science courses, specialization and practical oriented courses. The study of this program allows evaluation and monitoring of all aspects of the environment, rationale analysis and improvement of human impact in the natural world.

Kathmandu University school of sciences offers a Master of Philosophy in Physics of one year and six months from Kathmandu University. This program provides a solid foundation in advanced research in applied physics in areas of energy, environment, biophysics and material science. This course is designed for advanced studies and PhD pursuits.

Kathmandu University School of Science offers Bachelor of Science in Agriculture program. This program provides knowledge for development of the agriculture field and strengthens advocacy in agriculture research and development. The topics of learning are animal science, plant science, soil and pesticides, weed management, ecology, agriculture extension, horticulture, farming system, natural resource management, and production technology. This program provides food security both in terms of nutritional quality and quantity in the future.

Kathmandu University School of Science offers a Bachelor of Science in Bioinformatics program. This program is a combination of studies from modern information science with life sciences. It utilizes knowledge from computer science and mathematics to solve tasks of chemistry, biology and medicine. The area of competencies gained from this program are data analysis, software development project support and computation infrastructure in biology context, modeling, building and warehousing biological data, manage, interpret and analyze large data sets, apply statistics methodology, software engineering methodology, scripting language, web authorization tools, develop managerial and programming skills.

The Master of Science in Physics program of Kathmandu University School of Science was started to provide skill in teaching and potential in research. It provides knowledge of theoretical, experimental and applied physics. This program provides conceptual problem-solving ability, theoretical and experimental project design, expertise in employing computer software, and enhancing technical communication skills.

Kathmandu University School of Science offers a Bachelor of Data Science program which provides knowledge and skills of developing, implementing and evaluating data science projects. The course gives emphasis on mathematics, statistics, computer science, and business intelligence. Thus, students of Bachelor of Data Science have exposure in areas of Engineering, Science, Business, technology and industries. Data Scientists have to tackle intricate real world issues and tasks and optimizes the decision making and processes also. This course is offered from the Department of Mathematics, School of Science.

Bachelor of Science in Computational Mathematics is a four year program of Kathmandu University. This program provides solid mathematics knowledge and computational skills for competitive edge in wide variety of careers. This program which is interdisciplinary of math and computer science gives exposure to Engineering, Science, Technology and industries. 

MPhil in Math was designed by Kathmandu University to provide a wide depth of knowledge and skill in Mathematical tools for research, teaching, business and finance sectors. It provides knowledge of latest trends and development in math from areas of algebra, measure theory and functional analysis, operations research, calculus and variations, biomathematics, use of computer software, range of electives like computation mathematics, mathematical modeling, nonlinear analysis, topology, number theory and cryptography etc. and dissertation. 

Kathmandu University School of Science offers MPhil in Statistics of one year and six months. It provides knowledge in gathering, interpreting, analyzing and presenting large amounts of numerical data. This program prepares statisticians for government offices to international jobs. The study areas are advanced trends in statistics, data analysis, LaPlace distributions, stochastic models, queuing theory, research methods and dissertation work at semester's end.