Mahendra Boudha Secondary School also runs Plus2 Humanities program affiliated with the National Examination Board for two years. This program provides core knowledge in different areas to prepare for a public sector related professional path and higher studies in the same fields. It provides knowledge of social studies and life skill education with rural development, psychology, sociology, linguistics, economics, general law and mass communication to become public sector workers, publishers, media persons and consultants of public fields.

Mahendra Boudha Secondary School also offers Plus2 education program of National Examination Board. It provides knowledge on fundamental understanding of the education system, methods, procedures, guidance and concepts of counseling, and broad disciplines in education stream for developing knowledge in the path of teaching professions from areas of science, social science, math, computer, business, law, humanities, life skills, education and language courses.

Mahendra Boudha Secondary School offers Plus2 Management studies in Grades 11 and 12 affiliated with the National Examination board. This is a program which provides essential knowledge of management principles, functions for a healthy and profitable business whether the core area of entrepreneurship, corporate, industry such as hotel, travel and tourism and even computer application fields. It provides the core concepts of accounts, business, computer science, mathematics, economics, with a mix of social study and life-based education to prepare for further studies in the above areas of diverse professions.